Microbiome Health Protocols
Structured, citation-backed protocols translating microbiome research into specific strains, doses, and phased plans. Read online or download the full PDF for your practitioner.
Each protocol synthesizes systematic reviews, meta-analyses, and randomized controlled trials into an actionable plan — covering the specific organisms involved, evidence-based supplement strains with clinical dosing, dietary strategy, and a phased timeline. These are educational resources, not medical advice; review any protocol with a qualified healthcare provider.
ADHD Gut-Brain Axis Protocol: Probiotics and Nutrients
Evidence-based gut-brain protocol for ADHD: clinical probiotic strains, omega-3, vitamin D, magnesium, zinc and iron dosing, backed by 16 peer-reviewed studies.
Allergies & Hay Fever Microbiome Protocol: Gut-Lung Axis
Evidence-based hay fever and allergic rhinitis protocol: probiotic strains, prebiotic dosing, quercetin, and a two-phase plan to restore immune tolerance.
Anxiety & Depression Microbiome Protocol: Gut-Brain Plan
An evidence-based 12-week gut-brain protocol for anxiety and depression: psychobiotic strains, prebiotic dosing, Mediterranean diet, and a phased timeline.
Autism Spectrum Disorder Protocol: Gut-Brain Support
Evidence-based probiotic, vitamin D, omega-3, and diet strategies to support gut-brain health, GI comfort, and behavioral outcomes in autism spectrum disorder.
Autoimmune Microbiome Protocol: RA, Hashimoto's & MS
Evidence-based gut protocol for autoimmune disease: a daily prebiotic shake, RCT-backed probiotic strains, and a two-phase plan for RA, Hashimoto's, and MS.
Candida & Fungal Overgrowth Protocol: Evidence-Based Plan
Rebuild the bacterial colonization resistance that keeps Candida in check. Phased prebiotic, probiotic, and diet plan with dosing, backed by 16 studies.
Cholesterol & Cardiovascular Health Protocol: Gut-Heart Axis
Evidence-based protocol to lower LDL and protect your heart through the gut-heart axis: BSH-active probiotics, berberine, omega-3 EPA, and beta-glucan.
Common Cold & URTI Protocol: Gut-Lung Axis Immune Support
Evidence-based gut-lung axis protocol for the common cold and URTIs: prebiotic, probiotic, and dietary strategies tied to 24% fewer respiratory infections.
Crohn's Disease Microbiome Protocol: Diet & Supplements
Evidence-based Crohn's disease protocol: CDED dietary therapy, S. boulardii, vitamin D, and omega-3 dosing to help support remission and reduce recurrence.
Eczema & Atopic Dermatitis Protocol: Gut-Skin Axis Guide
Evidence-based gut-skin axis protocol for eczema and atopic dermatitis: probiotic strains with RCT data, prebiotic dosing, and a two-phase 12-week plan.
Gut Restoration Protocol: Microbiome Repair After Antibiotics
Evidence-based gut restoration protocol to rebuild your microbiome after antibiotics: 3 phases, probiotic strains, prebiotic dosing, and barrier repair.
Gut-Brain Cognitive Health & Dementia Prevention Protocol
Evidence-based gut-brain protocol for cognitive health: probiotic strains, omega-3, B vitamins, and the MIND diet, drawn from 16 peer-reviewed studies.
Healthy Aging & Longevity Protocol: Gut Microbiome Guide
Evidence-based healthy aging protocol: centenarian microbiome signatures, Mediterranean diet, Akkermansia, urolithin A, and spermidine to extend healthspan.
Histamine Intolerance Protocol: Gut, DAO Enzyme & Diet
Evidence-based histamine intolerance protocol covering gut dysbiosis, DAO enzyme support, histamine-safe probiotic strains, and a phased low-histamine diet.
IBS Microbiome Protocol: Evidence-Based Gut Restoration
A 2-phase IBS microbiome protocol with clinically studied probiotic strains, prebiotic dosing, diet strategy, and 8-week timeline for IBS-D, IBS-C, and IBS-M.
Lactose Intolerance Microbiome Protocol: Rebuild Tolerance
Evidence-based 12-week lactose intolerance protocol using GOS prebiotics, clinically studied probiotic strains, and gradual dairy reintroduction to build colonic adaptation.
Metabolic Health Microbiome Protocol: Blood Sugar Plan
An evidence-based 12-week metabolic protocol: Akkermansia and multi-strain probiotic dosing, resistant starch targets, berberine, and biomarker tracking.
Oral Microbiome & Dental Health Protocol: Evidence Guide
Evidence-based oral microbiome protocol: L. reuteri and S. salivarius strains with RCT data, xylitol dosing, the nitric oxide pathway, and a 6-month plan.
PCOS Gut Microbiome Protocol: Probiotics, Inositol & Diet
Evidence-based PCOS protocol targeting the gut-hormone-microbiome axis: probiotic strains, myo-inositol dosing, berberine, vitamin D, and a phased 6-month plan.
Pregnancy & Infant Microbiome Protocol: Conception to Year One
Evidence-based pregnancy and infant microbiome protocol: birth mode, HMOs, B. infantis EVC001 and L. rhamnosus HN001 dosing from preconception to age 2.
Psoriasis & Skin Health Protocol: Gut-Skin Axis Guide
Evidence-based psoriasis protocol using the gut-skin axis: multi-strain probiotics with RCT data, vitamin D, omega-3, curcumin, and a 24-week phased plan.
Respiratory & Immune Support Protocol: Gut-Lung Axis
Evidence-based respiratory and immune support protocol: gut-lung axis probiotic strains, vitamin D, zinc, and NAC dosing backed by 16 peer-reviewed studies.
SIBO and IMO Microbiome Protocol: Eradicate and Prevent
A two-phase SIBO and IMO protocol with breath-test subtypes, rifaximin and herbal antimicrobial dosing, prokinetic therapy, diet strategy, relapse prevention.
Sleep & Circadian Health Microbiome Protocol: Gut-Sleep Plan
An evidence-based 12-week gut-sleep protocol: L. gasseri CP2305 plus supporting strains, GOS prebiotic dosing, magnesium, L-theanine, 5-HTP, and a phased plan.
Ulcerative Colitis Microbiome Protocol: Evidence-Based Plan
A two-phase ulcerative colitis microbiome protocol: VSL#3 dosing, E. coli Nissle 1917, curcumin, prebiotic timing, flare diet, and calprotectin tracking.
Weight Management Microbiome Protocol: Gut & Metabolism
Evidence-based weight management protocol targeting the gut-metabolism axis: Akkermansia, L. gasseri SBT2055, berberine, SCFAs, and a 30-plant fiber plan.
Women's Vaginal & Urinary Health Protocol: BV & UTI Plan
Restore Lactobacillus dominance to prevent recurrent BV and UTIs. Phased probiotic, D-mannose, and cranberry plan with strain-level dosing, from 16 studies.