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Bacterium

Enterobacter cloacae

Common name: E. cloacae

Harmful Systemic Gut
Harmful
Effect
Systemic
Impact
Gut
Location
Common
Prevalence
Last reviewed: March 28, 2026

Nosocomial opportunistic pathogen with intrinsic antibiotic resistance and metabolic disease associations

Prevalence: Carried in the gastrointestinal tract of 40-80% of healthy adults as a normal commensal

Overview

Enterobacter cloacae is a Gram-negative, facultatively anaerobic, rod-shaped bacterium belonging to the family Enterobacteriaceae. It is a ubiquitous organism found in the human gastrointestinal tract, where it exists as a normal commensal in a significant proportion of the population. However, E. cloacae has emerged as one of the leading causes of nosocomial (hospital-acquired) infections, particularly in intensive care settings and among immunocompromised patients. The organism's ability to rapidly acquire antibiotic resistance genes through horizontal gene transfer makes it an increasingly challenging pathogen in healthcare environments.

Classification

E. cloacae is part of the Enterobacter cloacae complex (Ecc), which encompasses several closely related species that are difficult to distinguish using conventional biochemical methods. The complex belongs to the phylum Pseudomonadota (formerly Proteobacteria), class Gammaproteobacteria, order Enterobacterales. Genomic analyses have identified multiple type secretion systems (T1SS, T2SS, T4SS, T6SS) within E. cloacae strains, notably lacking the T3SS that is characteristic of many other enteric pathogens. The T4SS plays a particularly important role in horizontal gene transfer, facilitating the acquisition of antibiotic resistance determinants from other pathogenic bacteria.

Key Characteristics

E. cloacae possesses intrinsic resistance to ampicillin and first-generation cephalosporins through its chromosomal AmpC beta-lactamase. This enzyme can become derepressed through mutations, leading to resistance to extended-spectrum cephalosporins. Additionally, strains frequently acquire plasmid-mediated resistance genes, including extended-spectrum beta-lactamases (ESBLs) and carbapenemases, through horizontal gene transfer from organisms like Klebsiella pneumoniae and Escherichia coli. Hospital-associated strains tend to harbor distinct antibiotic resistance gene profiles compared to community isolates, reflecting selective pressure from antimicrobial use.

Health Significance

As an opportunistic pathogen, E. cloacae primarily causes disease in hospitalized, debilitated, or immunocompromised individuals. Common infections include urinary tract infections, respiratory tract infections, bacteremia, wound infections, and neonatal meningitis. The gastrointestinal tract serves as the primary reservoir for endogenous hospital infections. Emerging research has also linked E. cloacae to metabolic disease, with animal studies demonstrating that the organism can induce liver pathological changes, lipid accumulation, and activation of pro-inflammatory signaling pathways (HMGB1/TLR4/MyD88/NF-kB). The growing prevalence of multidrug-resistant strains is a significant public health concern. Maintaining a healthy, diverse gut microbiome through dietary fiber intake and judicious antibiotic use may help limit the overgrowth of opportunistic Enterobacter species. This organism may appear on comprehensive gut microbiome panels, where elevated levels could warrant clinical attention.

Associated Conditions

Related Organisms

Frequently Asked Questions

What is Enterobacter cloacae?

Enterobacter cloacae is a bacterium found in the human microbiome.

Where is Enterobacter cloacae found in the body?

Enterobacter cloacae is primarily found in the Gut.

What are the health impacts of Enterobacter cloacae?

Enterobacter cloacae primarily impacts Systemic and is potentially harmful for human health.

Research References

  1. Mezzatesta ML, et al.. Enterobacter cloacae complex: clinical impact and emerging antibiotic resistance. Infection and Immunity. 2012. doi:10.1128/IAI.00315-12
  2. Liu S, et al.. Pan-genome analysis of the Enterobacter cloacae complex. Nature Scientific Reports. 2020. doi:10.1038/s41598-020-65001-4